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GenBank Identifier | RefSeq Acc. | Name |
38639784 | NC_005266.1 | Raspberry ringspot virus RNA 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
24770 | + | 177 | 89 | 19 | -20.2 | NP_944487 | 5' arm 3' arm | ||
24771 | + | 560 | 81 | 19 | -27.6 | NP_944487 | 5' arm 3' arm | ||
24772 | + | 686 | 89 | 20 | -23 | NP_944487 | 5' arm 3' arm | ||
24773 | + | 1353 | 89 | 20 | -26.2 | NP_944487 | 5' arm 3' arm | ||
24774 | + | 1459 | 90 | 25.5 | -22.8 | NP_944487 | 5' arm 3' arm | ||
24775 | + | 2485 | 89 | 23 | -27.5 | NP_944487 | 5' arm 3' arm | ||
24776 | + | 3817 | 86 | 20.5 | -22.2 | NP_944487 | 5' arm 3' arm | ||
24777 | + | 4389 | 90 | 20 | -20.4 | NP_944487 | 5' arm 3' arm | ||
24778 | - | 435 | 86 | 21.5 | -21.8 | NP_944487 | 5' arm 3' arm | ||
24779 | - | 770 | 77 | 21 | -28.5 | NP_944487 | 5' arm 3' arm | ||
24780 | - | 1041 | 90 | 21 | -23.7 | NP_944487 | 5' arm 3' arm | ||
24781 | - | 4230 | 88 | 20.5 | -20 | NP_944487 | 5' arm 3' arm | ||
24782 | + | 380 | 89 | 21.5 | -29.3 | NP_944488 | 5' arm 3' arm | ||
24783 | + | 588 | 85 | 20.5 | -20.6 | NP_944488 | 5' arm 3' arm | ||
24784 | + | 727 | 89 | 19 | -20.8 | NP_944488 | 5' arm 3' arm | ||
24785 | + | 1234 | 88 | 19 | -21.01 | NP_944488 | 5' arm 3' arm | ||
24786 | + | 1940 | 90 | 20 | -22.6 | NP_944488 | 5' arm 3' arm | ||
24787 | + | 2351 | 90 | 22 | -25.6 | NP_944488 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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