miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057437 NC_005337.1 Bovine papular stomatitis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25744 - 564 87 20 -20.3 NP_958041 5' arm      3' arm
25514 + 7970 90 20.5 -22.6 NP_957918 5' arm      3' arm
25517 + 9393 90 20 -19.4 NP_957919 5' arm      3' arm
25515 + 8380 90 19.5 -21.2 NP_957918 5' arm      3' arm
25520 + 10888 90 23 -26.8 NP_957919 5' arm      3' arm
25524 + 13613 86 22 -31.6 NP_957924 5' arm      3' arm
25521 + 11462 89 21.5 -26 NP_957920 5' arm      3' arm
25525 + 13756 89 20.5 -22.8 NP_957924 5' arm      3' arm
25522 + 12941 90 20 -19.5 NP_957922 5' arm      3' arm
25513 + 7731 84 20.5 -20.3 NP_957918 5' arm      3' arm
25516 + 8980 84 21.5 -24.2 NP_957918 5' arm      3' arm
25510 + 6822 86 21.5 -28.1 NP_957917 5' arm      3' arm
25505 + 1901 87 21.5 -23.2 NP_957912 5' arm      3' arm
25503 + 44 90 21 -26.7 5' arm      3' arm
25507 + 3095 88 21 -25.7 NP_957913 5' arm      3' arm
25504 + 1541 88 20.5 -21 NP_957912 5' arm      3' arm
25506 + 2822 89 19 -19.8 NP_957913 5' arm      3' arm
25509 + 3860 89 19 -21.3 NP_957913 5' arm      3' arm
25512 + 7285 90 24.5 -31 NP_957917 5' arm      3' arm
25511 + 7054 90 24 -28 NP_957917 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.