miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2242	+	25895	90	22	-37.3	NP_040528		5' arm      3' arm
2232	+	10629	89	20.5	-36.3			5' arm      3' arm
2247	-	10718	87	23	-36.3			5' arm      3' arm
2268	-	24722	90	20	-32.7	NP_040528		5' arm      3' arm
2259	-	18400	90	19	-32.4	NP_040524		5' arm      3' arm
2243	-	2179	87	21	-30.6	NP_040512		5' arm      3' arm
2250	-	12655	86	22.5	-29.7	NP_040520		5' arm      3' arm
2219	+	4516	90	25	-29.6	NP_040515		5' arm      3' arm
2248	-	11153	90	23	-29.2	NP_040519		5' arm      3' arm
2277	-	34565	89	19.5	-28.5	NP_040534		5' arm      3' arm
2226	+	6597	86	22.5	-28.2	NP_040516		5' arm      3' arm
2228	+	8334	90	20	-28.2	NP_040517		5' arm      3' arm
2261	-	18966	89	20	-27.7	NP_040525		5' arm      3' arm
2230	+	10069	75	21	-27.3	NP_040518		5' arm      3' arm
2251	-	13108	90	20.5	-27.2	NP_040520		5' arm      3' arm
2254	-	13940	90	20	-26.7	NP_040520		5' arm      3' arm
2271	-	26441	89	20.5	-26.6	NP_040529		5' arm      3' arm
2270	-	26284	89	22.5	-26.2	NP_040529		5' arm      3' arm
2239	+	23279	79	19	-26	NP_040527		5' arm      3' arm
2222	+	5292	88	25.5	-25.9	NP_040516		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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