miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2237	+	17207	88	19	-25.6	NP_040523		5' arm      3' arm
2238	+	19029	90	20.5	-20	NP_040525		5' arm      3' arm
2239	+	23279	79	19	-26	NP_040527		5' arm      3' arm
2240	+	23846	90	21.5	-22	NP_040527		5' arm      3' arm
2241	+	25038	87	20.5	-23.4	NP_040528		5' arm      3' arm
2242	+	25895	90	22	-37.3	NP_040528		5' arm      3' arm
2243	-	2179	87	21	-30.6	NP_040512		5' arm      3' arm
2244	-	5846	88	21	-20.2	NP_040516		5' arm      3' arm
2245	-	6418	86	20	-22.8	NP_040516		5' arm      3' arm
2246	-	9095	86	20.5	-25.6	NP_040518		5' arm      3' arm
2247	-	10718	87	23	-36.3			5' arm      3' arm
2248	-	11153	90	23	-29.2	NP_040519		5' arm      3' arm
2249	-	12462	89	20	-21.5	NP_040520		5' arm      3' arm
2250	-	12655	86	22.5	-29.7	NP_040520		5' arm      3' arm
2251	-	13108	90	20.5	-27.2	NP_040520		5' arm      3' arm
2252	-	13645	89	19	-25.1	NP_040520		5' arm      3' arm
2253	-	13765	87	21	-20	NP_040520		5' arm      3' arm
2254	-	13940	90	20	-26.7	NP_040520		5' arm      3' arm
2255	-	15522	89	21.5	-22.6	NP_040521		5' arm      3' arm
2256	-	17030	89	20.5	-20.2	NP_040523		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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