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GenBank Identifier | RefSeq Acc. | Name |
52801677 | NC_006324.1 | Bovine adenovirus A |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
30292 | - | 16346 | 87 | 20.5 | -32.7 | YP_094037 | 5' arm 3' arm | ||
30291 | - | 15113 | 88 | 22.5 | -28.5 | 5' arm 3' arm | |||
30289 | + | 27898 | 89 | 21 | -27.6 | YP_094049 | 5' arm 3' arm | ||
30286 | + | 17529 | 90 | 20 | -27 | YP_094039 | 5' arm 3' arm | ||
30279 | + | 961 | 88 | 23 | -26.8 | 5' arm 3' arm | |||
30305 | - | 33644 | 88 | 23 | -26.8 | 5' arm 3' arm | |||
30281 | + | 6482 | 89 | 21 | -26.1 | YP_094032 | 5' arm 3' arm | ||
30304 | - | 27043 | 89 | 23 | -25.5 | YP_094047 | 5' arm 3' arm | ||
30302 | - | 25284 | 90 | 23.5 | -25.3 | YP_094045 | 5' arm 3' arm | ||
30301 | - | 24362 | 90 | 19.5 | -24.5 | YP_094044 | 5' arm 3' arm | ||
30295 | - | 18040 | 90 | 22.5 | -23.5 | YP_094039 | 5' arm 3' arm | ||
30285 | + | 15451 | 87 | 20 | -23.4 | YP_094037 | 5' arm 3' arm | ||
30303 | - | 26543 | 85 | 22.5 | -23.3 | YP_094047 | 5' arm 3' arm | ||
30297 | - | 21756 | 89 | 20 | -22.7 | YP_094041 | 5' arm 3' arm | ||
30283 | + | 7189 | 89 | 20 | -22.7 | YP_094032 | 5' arm 3' arm | ||
30282 | + | 6717 | 90 | 19.5 | -22.6 | YP_094032 | 5' arm 3' arm | ||
30287 | + | 22073 | 88 | 20 | -22.2 | YP_094041 | 5' arm 3' arm | ||
30300 | - | 23987 | 90 | 23.5 | -22 | YP_094042 | 5' arm 3' arm | ||
30296 | - | 18362 | 89 | 20.5 | -21.6 | YP_094039 | 5' arm 3' arm | ||
30280 | + | 3839 | 90 | 22 | -21.2 | YP_094030 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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