miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626553 NC_001454.1 Human adenovirus F

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2514 + 26095 90 22.5 -24.5 5' arm      3' arm
2500 + 3396 89 21 -23.8 NP_040851 5' arm      3' arm
2501 + 7459 87 20.5 -21.4 NP_040853 5' arm      3' arm
2502 + 7746 88 19 -25.2 NP_040853 5' arm      3' arm
2503 + 8766 84 21.5 -19.7 NP_040854 5' arm      3' arm
2504 + 9478 90 19 -26.1 NP_040854 5' arm      3' arm
2507 + 10716 90 23 -27 NP_040855 5' arm      3' arm
2505 + 10329 85 19 -36.5 NP_040855 5' arm      3' arm
2506 + 10583 89 19.5 -21.5 NP_040855 5' arm      3' arm
2518 - 13076 90 21 -19.9 NP_040856 5' arm      3' arm
2515 - 11597 90 21 -28.9 NP_040856 5' arm      3' arm
2516 - 12625 82 20 -21.3 NP_040856 5' arm      3' arm
2517 - 12850 89 21 -26.2 NP_040856 5' arm      3' arm
2509 + 12598 89 20.5 -19.8 NP_040856 5' arm      3' arm
2508 + 11393 88 21.5 -20.4 NP_040856 5' arm      3' arm
2519 - 14655 90 23 -23.8 NP_040857 5' arm      3' arm
2510 + 15161 87 20.5 -25.5 NP_040858 5' arm      3' arm
2511 + 16011 89 19 -32.9 NP_040859 5' arm      3' arm
2520 - 15878 80 20 -27.1 NP_040859 5' arm      3' arm
2521 - 17164 90 20 -19.92 NP_040861 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.