miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8345	+	24453	87	24	-34.1	NP_597871		5' arm      3' arm
8342	+	22591	89	20	-34.1	NP_597870		5' arm      3' arm
8355	-	10740	90	26.5	-32.6	NP_049377		5' arm      3' arm
8343	+	22944	88	19	-31	NP_597871		5' arm      3' arm
8376	-	20956	90	19.5	-30.3	NP_049381		5' arm      3' arm
8325	+	5232	88	20.5	-30.1	NP_049375		5' arm      3' arm
8346	+	25039	84	19.5	-29.8			5' arm      3' arm
8371	-	17698	88	21.5	-29.7	NP_049380		5' arm      3' arm
8337	+	17324	88	21.5	-29.5	NP_049380		5' arm      3' arm
8319	+	2820	87	20	-29.5	NP_597865		5' arm      3' arm
8351	-	3355	87	19	-29.2	NP_597865		5' arm      3' arm
8365	-	15600	89	23	-28.9			5' arm      3' arm
8359	-	11877	90	21	-27.9	NP_049378		5' arm      3' arm
8374	-	20475	90	19	-27.8	NP_597869		5' arm      3' arm
8331	+	10920	90	21	-27.3	NP_049377		5' arm      3' arm
8367	-	16173	89	22	-27.1	NP_597867		5' arm      3' arm
8338	+	17413	90	21	-27	NP_049380		5' arm      3' arm
8377	-	21096	87	22	-26.6	NP_049381		5' arm      3' arm
8380	-	25570	83	22	-26.5	NP_597872		5' arm      3' arm
8384	-	32933	87	21.5	-26.3	NP_597880		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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