miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27482	-	32550	90	24.5	-31.5	YP_009222		5' arm      3' arm
27441	-	3960	90	24.5	-24	YP_009199		5' arm      3' arm
27419	+	8263	89	24.5	-33.1	YP_009201		5' arm      3' arm
27413	+	5636	89	24.5	-24.1	YP_009201		5' arm      3' arm
27405	+	1342	80	24	-19.8			5' arm      3' arm
27416	+	7047	88	23.5	-24.7	YP_009201		5' arm      3' arm
27464	-	24193	90	23	-30.6	YP_009213		5' arm      3' arm
27426	+	12972	89	23	-22.2	YP_009204		5' arm      3' arm
27418	+	8101	90	23	-29	YP_009201		5' arm      3' arm
27454	-	16468	88	23	-22.3	YP_009207		5' arm      3' arm
27410	+	4560	89	23	-20.8	YP_009200		5' arm      3' arm
27457	-	20890	83	22.5	-24.4	YP_009210		5' arm      3' arm
27455	-	17301	90	22.5	-22.7	YP_009207		5' arm      3' arm
27450	-	14632	89	22.5	-25	YP_009205		5' arm      3' arm
27481	-	32360	86	22.5	-33.1	YP_009222		5' arm      3' arm
27476	-	28715	90	22.5	-21.6	YP_009218		5' arm      3' arm
27480	-	31822	90	22.5	-19.6	YP_009221		5' arm      3' arm
27453	-	15352	89	22	-28.7	YP_009206		5' arm      3' arm
27447	-	13061	90	22	-22.7	YP_009204		5' arm      3' arm
27452	-	15206	87	22	-24.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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