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GenBank Identifier | RefSeq Acc. | Name |
9964607 | NC_002519.1 | Roseophage SIO1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9402 | + | 7300 | 85 | 19.5 | -21.6 | NP_064745 | 5' arm 3' arm | ||
9403 | + | 22141 | 90 | 22.5 | -23.4 | NP_064758 | 5' arm 3' arm | ||
9404 | + | 23218 | 85 | 20.5 | -27.7 | NP_597931 | 5' arm 3' arm | ||
9405 | + | 31846 | 89 | 19.5 | -21.9 | NP_064763 | 5' arm 3' arm | ||
9406 | + | 39665 | 89 | 20 | -25.9 | NP_597932 | 5' arm 3' arm | ||
9407 | - | 3223 | 89 | 20 | -25.9 | NP_597932 | 5' arm 3' arm | ||
9408 | - | 6000 | 89 | 20.5 | -22.3 | NP_064744 | 5' arm 3' arm | ||
9409 | - | 7124 | 86 | 21 | -20.1 | NP_064745 | 5' arm 3' arm | ||
9410 | - | 8560 | 86 | 22 | -25.3 | 5' arm 3' arm | |||
9411 | - | 23931 | 80 | 20.5 | -24.3 | 5' arm 3' arm | |||
9412 | - | 27031 | 90 | 19 | -20.51 | NP_064762 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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