miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626677 NC_001472.1 Human enterovirus B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2558 + 300 87 21.5 -33.2 5' arm      3' arm
2559 + 2018 90 22.5 -22.1 NP_040958 5' arm      3' arm
2560 + 3642 88 21.5 -23.8 NP_040958 5' arm      3' arm
2561 + 4398 89 20.5 -19.6 NP_040958 5' arm      3' arm
2562 + 6885 88 20 -19.6 NP_040958 5' arm      3' arm
2563 + 7123 83 20 -24.3 NP_040958 5' arm      3' arm
2564 - 2996 89 22 -21.5 NP_040958 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.