miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179217 NC_005355.1 Lactobacillus johnsonii prophage Lj965 provirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26438 + 26487 90 19.5 -22.8 NP_958593 5' arm      3' arm
26437 + 20571 86 21.5 -26 5' arm      3' arm
26439 + 39354 89 22.5 -29.4 5' arm      3' arm
26440 - 32683 89 23 -22 NP_958595 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.