miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
16519569 NC_003203.1 Grapevine fanleaf virus satellite RNA

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
11728 + 600 90 24.5 -24.1 NP_443755 5' arm      3' arm
11729 - 485 84 22 -22.34 NP_443755 5' arm      3' arm
11730 - 590 89 20.5 -21.7 NP_443755 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.