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GenBank Identifier | RefSeq Acc. | Name |
21427645 | NC_004012.1 | Garlic virus E |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15560 | + | 1236 | 88 | 19 | -29.3 | NP_659010 | 5' arm 3' arm | ||
15561 | + | 1663 | 89 | 19.5 | -21.9 | NP_659010 | 5' arm 3' arm | ||
15562 | + | 2314 | 88 | 19 | -20.2 | NP_659010 | 5' arm 3' arm | ||
15563 | - | 574 | 89 | 20.5 | -19.7 | NP_659010 | 5' arm 3' arm | ||
15564 | - | 935 | 87 | 22 | -21.8 | NP_659010 | 5' arm 3' arm | ||
15565 | - | 2961 | 88 | 23.5 | -20.3 | NP_659010 | 5' arm 3' arm | ||
15566 | - | 3816 | 90 | 22.5 | -24.8 | NP_659010 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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