miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
21427645 NC_004012.1 Garlic virus E

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15560 + 1236 88 19 -29.3 NP_659010 5' arm      3' arm
15561 + 1663 89 19.5 -21.9 NP_659010 5' arm      3' arm
15562 + 2314 88 19 -20.2 NP_659010 5' arm      3' arm
15563 - 574 89 20.5 -19.7 NP_659010 5' arm      3' arm
15564 - 935 87 22 -21.8 NP_659010 5' arm      3' arm
15565 - 2961 88 23.5 -20.3 NP_659010 5' arm      3' arm
15566 - 3816 90 22.5 -24.8 NP_659010 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.