miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18640469 NC_003390.1 Cyanophage P60

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13049 + 46631 89 19 -20.7 5' arm      3' arm
13050 - 346 89 19 -21.6 5' arm      3' arm
13026 + 15782 89 22 -21.6 5' arm      3' arm
13061 - 10749 86 20 -20.8 5' arm      3' arm
13052 - 2499 88 20 -21 5' arm      3' arm
13017 + 7372 89 22.5 -22.1 5' arm      3' arm
13073 - 34380 87 19 -22.4 5' arm      3' arm
13009 + 2483 84 19 -21.9 5' arm      3' arm
13008 + 844 88 20 -19.4 5' arm      3' arm
13041 + 34017 89 19 -28 5' arm      3' arm
13058 - 7460 87 20 -25.82 5' arm      3' arm
13051 - 1141 84 21.5 -27 NP_570313 5' arm      3' arm
13054 - 3976 87 21 -23.1 NP_570316 5' arm      3' arm
13053 - 3561 89 20 -24.5 NP_570316 5' arm      3' arm
13010 + 3472 89 19 -22.2 NP_570316 5' arm      3' arm
13012 + 3827 83 19.5 -21.8 NP_570316 5' arm      3' arm
13011 + 3715 89 21 -20.2 NP_570316 5' arm      3' arm
13014 + 5612 83 19 -27 NP_570317 5' arm      3' arm
13013 + 4794 90 21.5 -23.6 NP_570317 5' arm      3' arm
13015 + 6702 89 20 -20.5 NP_570319 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.