miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18640469 NC_003390.1 Cyanophage P60

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13036 + 29165 89 19 -23.5 NP_570351 5' arm      3' arm
13073 - 34380 87 19 -22.4 5' arm      3' arm
13023 + 11125 86 19 -20.5 NP_570324 5' arm      3' arm
13067 - 21790 90 19 -24.7 NP_570342 5' arm      3' arm
13014 + 5612 83 19 -27 NP_570317 5' arm      3' arm
13055 - 6867 87 19 -23.1 NP_570319 5' arm      3' arm
13075 - 36023 88 19 -24.2 NP_570364 5' arm      3' arm
13049 + 46631 89 19 -20.7 5' arm      3' arm
13041 + 34017 89 19 -28 5' arm      3' arm
13050 - 346 89 19 -21.6 5' arm      3' arm
13010 + 3472 89 19 -22.2 NP_570316 5' arm      3' arm
13009 + 2483 84 19 -21.9 5' arm      3' arm
13034 + 28086 90 19.5 -20 NP_570351 5' arm      3' arm
13025 + 15085 89 19.5 -20.1 NP_570330 5' arm      3' arm
13078 - 41365 87 19.5 -22.9 NP_570375 5' arm      3' arm
13040 + 33420 87 19.5 -22.1 NP_570361 5' arm      3' arm
13082 - 44187 89 19.5 -25.4 NP_570384 5' arm      3' arm
13012 + 3827 83 19.5 -21.8 NP_570316 5' arm      3' arm
13029 + 21837 90 19.5 -29.1 NP_570342 5' arm      3' arm
13022 + 10188 89 20 -22.7 NP_570322 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.