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GenBank Identifier | RefSeq Acc. | Name |
20889389 | NC_003876.1 | Gremmeniella abietina RNA virus L1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15335 | + | 6 | 86 | 19 | -22.5 | 5' arm 3' arm | |||
15336 | + | 412 | 87 | 19 | -22.6 | NP_624332 | 5' arm 3' arm | ||
15337 | + | 666 | 83 | 20 | -26.2 | NP_624331 | 5' arm 3' arm | ||
15338 | + | 966 | 88 | 19.5 | -30.2 | NP_624332 | 5' arm 3' arm | ||
15339 | + | 1316 | 89 | 20.5 | -23.1 | NP_624331 | 5' arm 3' arm | ||
15340 | + | 2336 | 89 | 23.5 | -20.14 | NP_624331 | 5' arm 3' arm | ||
15341 | + | 3210 | 88 | 20.5 | -33.81 | NP_624332 | 5' arm 3' arm | ||
15342 | + | 4101 | 90 | 23.5 | -27.3 | NP_624332 | 5' arm 3' arm | ||
15343 | - | 773 | 90 | 21 | -26.3 | NP_624331 | 5' arm 3' arm | ||
15344 | - | 931 | 85 | 20 | -25.4 | NP_624332 | 5' arm 3' arm | ||
15345 | - | 1947 | 89 | 20 | -19.8 | NP_624332 | 5' arm 3' arm | ||
15346 | - | 2189 | 87 | 20 | -19.8 | NP_624332 | 5' arm 3' arm | ||
15347 | - | 4338 | 89 | 21.5 | -19.6 | NP_624332 | 5' arm 3' arm | ||
15348 | - | 4474 | 90 | 20.5 | -21.7 | NP_624332 | 5' arm 3' arm | ||
15349 | - | 4573 | 89 | 21 | -20.9 | NP_624332 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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