miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20889389 NC_003876.1 Gremmeniella abietina RNA virus L1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15335 + 6 86 19 -22.5 5' arm      3' arm
15336 + 412 87 19 -22.6 NP_624332 5' arm      3' arm
15337 + 666 83 20 -26.2 NP_624331 5' arm      3' arm
15338 + 966 88 19.5 -30.2 NP_624332 5' arm      3' arm
15339 + 1316 89 20.5 -23.1 NP_624331 5' arm      3' arm
15340 + 2336 89 23.5 -20.14 NP_624331 5' arm      3' arm
15341 + 3210 88 20.5 -33.81 NP_624332 5' arm      3' arm
15342 + 4101 90 23.5 -27.3 NP_624332 5' arm      3' arm
15343 - 773 90 21 -26.3 NP_624331 5' arm      3' arm
15344 - 931 85 20 -25.4 NP_624332 5' arm      3' arm
15345 - 1947 89 20 -19.8 NP_624332 5' arm      3' arm
15346 - 2189 87 20 -19.8 NP_624332 5' arm      3' arm
15347 - 4338 89 21.5 -19.6 NP_624332 5' arm      3' arm
15348 - 4474 90 20.5 -21.7 NP_624332 5' arm      3' arm
15349 - 4573 89 21 -20.9 NP_624332 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.