miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18653809 NC_003401.1 Cercopithecine herpesvirus 17

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13271 - 126384 87 20.5 -20.7 NP_570823 5' arm      3' arm
13270 - 125718 88 20.5 -27.4 NP_570823 5' arm      3' arm
13269 - 123395 90 22.5 -19.7 NP_570821 5' arm      3' arm
13268 - 122600 86 20.5 -26.4 5' arm      3' arm
13267 - 119721 89 20 -19.8 NP_570818 5' arm      3' arm
13266 - 118740 89 23 -30.4 NP_598366 5' arm      3' arm
13265 - 118605 88 24.5 -31.7 NP_598366 5' arm      3' arm
13264 - 118414 90 22.5 -21.8 5' arm      3' arm
13263 - 118317 89 21 -33.1 5' arm      3' arm
13262 - 117813 85 22 -20.86 5' arm      3' arm
13261 - 117067 90 28.5 -26.5 5' arm      3' arm
13260 - 116885 89 23 -30.4 5' arm      3' arm
13259 - 116703 90 22.5 -23.8 5' arm      3' arm
13258 - 114876 84 27 -21.9 5' arm      3' arm
13257 - 114772 89 27 -28.7 5' arm      3' arm
13256 - 114590 88 26 -22.2 5' arm      3' arm
13255 - 114339 88 24.5 -28.6 5' arm      3' arm
13254 - 113934 86 29.5 -20 5' arm      3' arm
13253 - 113748 87 29 -24.9 5' arm      3' arm
13252 - 113572 88 26.5 -30.3 NP_598364 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.