miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18653809 NC_003401.1 Cercopithecine herpesvirus 17

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13205 - 20799 68 22 -34.3 5' arm      3' arm
13190 - 13597 89 26 -34 NP_570749 5' arm      3' arm
13157 + 118653 88 25.5 -33.7 NP_598366 5' arm      3' arm
13263 - 118317 89 21 -33.1 5' arm      3' arm
13148 + 113487 84 24.5 -32.8 NP_598364 5' arm      3' arm
13249 - 113152 89 28 -32.7 5' arm      3' arm
13191 - 14293 89 22 -32.7 NP_570750 5' arm      3' arm
13265 - 118605 88 24.5 -31.7 NP_598366 5' arm      3' arm
13136 + 79906 90 27 -31.1 NP_570798 5' arm      3' arm
13104 + 15017 90 19 -30.6 NP_570750 5' arm      3' arm
13099 + 10832 90 22.5 -30.5 NP_570748 5' arm      3' arm
13266 - 118740 89 23 -30.4 NP_598366 5' arm      3' arm
13160 + 120960 90 22 -30.4 NP_570820 5' arm      3' arm
13260 - 116885 89 23 -30.4 5' arm      3' arm
13161 + 121259 90 21.5 -30.4 NP_570820 5' arm      3' arm
13252 - 113572 88 26.5 -30.3 NP_598364 5' arm      3' arm
13204 - 20707 87 23.5 -30.1 5' arm      3' arm
13223 - 69744 87 22 -29.9 NP_570791 5' arm      3' arm
13248 - 111524 89 20.5 -29.02 NP_570816 5' arm      3' arm
13215 - 43248 88 19 -28.9 NP_570765 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.