miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13487887 NC_002701.1 Eimeria brunetti RNA virus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10613 + 21 89 22 -20.8 5' arm      3' arm
10614 + 160 89 20.5 -31.6 5' arm      3' arm
10615 + 626 86 20 -21.2 NP_108650 5' arm      3' arm
10616 + 908 88 20.5 -21 NP_108650 5' arm      3' arm
10618 + 1558 90 20.5 -22.3 NP_108650 5' arm      3' arm
10617 + 1330 90 20 -27.6 NP_108650 5' arm      3' arm
10619 + 2176 89 20 -23.8 NP_108650 5' arm      3' arm
10623 + 5217 89 23.5 -20.4 NP_108651 5' arm      3' arm
10620 + 3691 85 19 -21.2 NP_108651 5' arm      3' arm
10621 + 4448 89 23 -22.8 NP_108651 5' arm      3' arm
10622 + 4904 89 23 -22.7 NP_108651 5' arm      3' arm
10624 - 2731 88 19 -23.9 NP_108651 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.