miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
19881389 NC_003491.1 Beet mild yellowing virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13645 + 2404 90 22.5 -25.9 NP_620479 5' arm      3' arm
13646 - 2571 90 21.5 -28 NP_620479 5' arm      3' arm
13647 - 2698 90 19 -21 NP_620479 5' arm      3' arm
13648 - 3744 90 22.5 -24.4 NP_612216 5' arm      3' arm
13649 - 4273 89 20 -28.7 NP_620480 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.