miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
27311166 NC_004455.1 Simian immunodeficiency virus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17467 - 5871 88 20.5 -29.6 5' arm      3' arm
17463 + 1266 87 20.5 -27.8 NP_758886 5' arm      3' arm
17466 - 1450 90 19 -22.7 NP_758886 5' arm      3' arm
17464 + 3047 86 21 -20.3 NP_758887 5' arm      3' arm
17465 + 8771 90 20 -26.7 NP_758893 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.