miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
30018268 NC_004732.1 Melon chlorotic leaf curl virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20980 - 428 86 19.5 -23.6 NP_835272 5' arm      3' arm
20979 + 2521 87 21.5 -26.2 5' arm      3' arm
15319 - 2606 85 21 -24.71 5' arm      3' arm
15318 + 2520 89 21.5 -28.7 5' arm      3' arm
15317 + 2242 89 19 -19.9 NP_620883 5' arm      3' arm
15314 - 2608 90 19 -26.41 5' arm      3' arm
15313 + 2520 88 21 -25.3 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.