miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
50261346 NC_005985.1 Pelargonium chlorotic ring pattern virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28614 + 37 89 25 -25.9 YP_052926 5' arm      3' arm
28616 + 904 80 23 -26.3 YP_052925 5' arm      3' arm
28617 + 3384 89 20 -24.7 YP_052929 5' arm      3' arm
28615 + 663 87 19.5 -21.6 YP_052926 5' arm      3' arm
28618 - 3322 90 19 -22.6 YP_052930 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.