miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29134936 NC_004629.1 Pseudomonas phage phiKZ

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17748 + 19072 87 19 -31.5 NP_803593 5' arm      3' arm
17774 - 208238 87 20.5 -29.2 5' arm      3' arm
17759 + 167806 88 19 -28.8 5' arm      3' arm
17760 + 173075 85 23.5 -28 5' arm      3' arm
17752 + 97587 90 19.5 -27.7 5' arm      3' arm
17778 - 277899 89 20.5 -27.7 5' arm      3' arm
17757 + 146539 89 21.5 -27.1 NP_803710 5' arm      3' arm
17755 + 126740 90 22.5 -26.9 5' arm      3' arm
17770 - 167972 89 22 -26.5 5' arm      3' arm
17761 + 173769 87 26 -25.6 5' arm      3' arm
17750 + 50086 90 24 -25.5 NP_803622 5' arm      3' arm
17753 + 104476 90 21 -24.8 NP_803666 5' arm      3' arm
17754 + 126006 89 20.5 -24.5 5' arm      3' arm
17758 + 150694 85 19 -24 NP_803712 5' arm      3' arm
17771 - 173855 87 23 -23.8 5' arm      3' arm
17773 - 195801 89 20.5 -23.1 NP_803747 5' arm      3' arm
17751 + 52591 89 24 -22.8 5' arm      3' arm
17756 + 131788 87 20.5 -22.7 NP_803695 5' arm      3' arm
17769 - 151161 90 23.5 -22.7 NP_803712 5' arm      3' arm
17768 - 135324 90 24.5 -22.5 NP_803697 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.