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GenBank Identifier | RefSeq Acc. | Name |
15741225 | NC_003113.1 | Perina nuda picorna-like virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
11706 | + | 1356 | 87 | 23 | -22.36 | NP_277061 | 5' arm 3' arm | ||
11707 | + | 1881 | 86 | 20 | -19.8 | NP_277061 | 5' arm 3' arm | ||
11708 | + | 1992 | 87 | 22 | -24.7 | NP_277061 | 5' arm 3' arm | ||
11709 | + | 2203 | 90 | 26.5 | -25.7 | NP_277061 | 5' arm 3' arm | ||
11710 | + | 2714 | 90 | 28 | -25.9 | NP_277061 | 5' arm 3' arm | ||
11711 | + | 2984 | 90 | 24 | -22.8 | NP_277061 | 5' arm 3' arm | ||
11712 | + | 3077 | 88 | 21 | -33.6 | NP_277061 | 5' arm 3' arm | ||
11713 | + | 3880 | 89 | 25.5 | -30.8 | NP_277061 | 5' arm 3' arm | ||
11714 | + | 5084 | 90 | 20.5 | -25.4 | NP_277061 | 5' arm 3' arm | ||
11715 | + | 5804 | 90 | 20 | -22.8 | NP_277061 | 5' arm 3' arm | ||
11716 | + | 6752 | 90 | 25.5 | -22.9 | NP_277061 | 5' arm 3' arm | ||
11717 | - | 1971 | 88 | 19 | -26.2 | NP_277061 | 5' arm 3' arm | ||
11718 | - | 2078 | 89 | 21.5 | -26.6 | NP_277061 | 5' arm 3' arm | ||
11719 | - | 2213 | 83 | 20.5 | -23.69 | NP_277061 | 5' arm 3' arm | ||
11720 | - | 2516 | 90 | 23.5 | -19.5 | NP_277061 | 5' arm 3' arm | ||
11721 | - | 4063 | 87 | 23 | -26.6 | NP_277061 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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