miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
33770508 NC_005069.1 Bacteriophage PY54 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22494 + 8756 85 20.5 -27.5 NP_892058 5' arm      3' arm
22495 + 9407 90 21.5 -26.9 5' arm      3' arm
22496 + 17960 88 19.5 -27.3 NP_892069 5' arm      3' arm
22497 + 18272 90 21.5 -22.6 NP_892069 5' arm      3' arm
22498 + 30299 88 19 -25.2 NP_892081 5' arm      3' arm
22499 - 19246 89 20 -20.3 NP_892070 5' arm      3' arm
22500 - 27930 89 20 -22.4 NP_892081 5' arm      3' arm
22501 - 41184 87 21.5 -23.3 5' arm      3' arm
22502 - 42680 78 19.5 -24.7 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.