miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56160703 AC_000013.1 Fowl adenovirus 9

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
503 - 43584 90 23 -25.8 AP_000398 5' arm      3' arm
502 - 38608 90 20.5 -26 AP_000395 5' arm      3' arm
501 - 38462 88 21 -20.2 AP_000395 5' arm      3' arm
500 - 38359 87 19 -24.3 AP_000395 5' arm      3' arm
499 - 37970 90 22 -21 AP_000395 5' arm      3' arm
498 - 37696 87 20 -23.4 5' arm      3' arm
497 - 37523 87 20 -19.4 5' arm      3' arm
496 - 31026 89 21.5 -23 AP_000390 5' arm      3' arm
495 - 30301 88 21.5 -19.8 AP_000390 5' arm      3' arm
494 - 29529 90 21 -22.7 AP_000388 5' arm      3' arm
493 - 29387 90 22.5 -23.3 AP_000388 5' arm      3' arm
492 - 28889 86 19.5 -29.7 AP_000387 5' arm      3' arm
491 - 28546 88 23 -21.3 AP_000387 5' arm      3' arm
490 - 28371 88 23.5 -21.9 AP_000387 5' arm      3' arm
489 - 28082 89 19.5 -23.7 5' arm      3' arm
488 - 22378 87 24 -21.2 AP_000384 5' arm      3' arm
487 - 20764 86 22.5 -24.2 AP_000384 5' arm      3' arm
486 - 18212 89 19 -25.4 AP_000381 5' arm      3' arm
485 - 17809 90 21.5 -19.6 AP_000380 5' arm      3' arm
484 - 16937 90 20 -22.9 AP_000380 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.