miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56160703 AC_000013.1 Fowl adenovirus 9

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
480 - 11692 80 20.5 -30.6 AP_000377 5' arm      3' arm
492 - 28889 86 19.5 -29.7 AP_000387 5' arm      3' arm
447 + 1563 88 23 -29.2 AP_000369 5' arm      3' arm
473 + 23846 90 21 -29.2 AP_000386 5' arm      3' arm
464 + 11280 87 21 -28.8 AP_000377 5' arm      3' arm
465 + 11609 87 19 -26.9 AP_000377 5' arm      3' arm
446 + 1240 89 21.5 -26.6 AP_000367 5' arm      3' arm
483 - 16708 88 23 -26.5 AP_000380 5' arm      3' arm
449 + 2408 88 23.5 -26.1 AP_000371 5' arm      3' arm
467 + 13633 90 20 -26 AP_000378 5' arm      3' arm
502 - 38608 90 20.5 -26 AP_000395 5' arm      3' arm
503 - 43584 90 23 -25.8 AP_000398 5' arm      3' arm
458 + 8318 88 20 -25.8 5' arm      3' arm
475 + 29573 89 19.5 -25.8 AP_000388 5' arm      3' arm
474 + 28802 90 23 -25.6 AP_000387 5' arm      3' arm
486 - 18212 89 19 -25.4 AP_000381 5' arm      3' arm
477 + 37881 90 22 -24.5 AP_000395 5' arm      3' arm
456 + 7447 90 21 -24.4 5' arm      3' arm
448 + 2211 90 20.5 -24.4 AP_000371 5' arm      3' arm
471 + 17529 87 21 -24.39 AP_000380 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.