miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56160703 AC_000013.1 Fowl adenovirus 9

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
463 + 10743 90 19 -22.9 5' arm      3' arm
486 - 18212 89 19 -25.4 AP_000381 5' arm      3' arm
500 - 38359 87 19 -24.3 AP_000395 5' arm      3' arm
465 + 11609 87 19 -26.9 AP_000377 5' arm      3' arm
470 + 17087 89 19.5 -21.6 AP_000380 5' arm      3' arm
475 + 29573 89 19.5 -25.8 AP_000388 5' arm      3' arm
445 + 903 86 19.5 -21.6 AP_000367 5' arm      3' arm
489 - 28082 89 19.5 -23.7 5' arm      3' arm
492 - 28889 86 19.5 -29.7 AP_000387 5' arm      3' arm
497 - 37523 87 20 -19.4 5' arm      3' arm
484 - 16937 90 20 -22.9 AP_000380 5' arm      3' arm
458 + 8318 88 20 -25.8 5' arm      3' arm
455 + 6019 90 20 -22 AP_000375 5' arm      3' arm
467 + 13633 90 20 -26 AP_000378 5' arm      3' arm
476 + 34351 89 20 -21.7 AP_000394 5' arm      3' arm
498 - 37696 87 20 -23.4 5' arm      3' arm
444 + 689 90 20 -20.6 AP_000366 5' arm      3' arm
452 + 5179 88 20.5 -23.8 AP_000374 5' arm      3' arm
451 + 5047 89 20.5 -21.1 AP_000374 5' arm      3' arm
460 + 8851 90 20.5 -23.7 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.