miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
452	+	5179	88	20.5	-23.8	AP_000374		5' arm      3' arm
451	+	5047	89	20.5	-21.1	AP_000374		5' arm      3' arm
455	+	6019	90	20	-22	AP_000375		5' arm      3' arm
454	+	5870	89	23.5	-20.6	AP_000375		5' arm      3' arm
453	+	5374	89	24.5	-21.9	AP_000375		5' arm      3' arm
480	-	11692	80	20.5	-30.6	AP_000377		5' arm      3' arm
466	+	12082	88	22	-20.5	AP_000377		5' arm      3' arm
465	+	11609	87	19	-26.9	AP_000377		5' arm      3' arm
464	+	11280	87	21	-28.8	AP_000377		5' arm      3' arm
481	-	13376	90	25.5	-20.9	AP_000378		5' arm      3' arm
467	+	13633	90	20	-26	AP_000378		5' arm      3' arm
482	-	13945	90	21.5	-22.2	AP_000378		5' arm      3' arm
469	+	15812	87	21	-20	AP_000379		5' arm      3' arm
468	+	14560	90	22.5	-23	AP_000379		5' arm      3' arm
471	+	17529	87	21	-24.39	AP_000380		5' arm      3' arm
485	-	17809	90	21.5	-19.6	AP_000380		5' arm      3' arm
483	-	16708	88	23	-26.5	AP_000380		5' arm      3' arm
484	-	16937	90	20	-22.9	AP_000380		5' arm      3' arm
470	+	17087	89	19.5	-21.6	AP_000380		5' arm      3' arm
486	-	18212	89	19	-25.4	AP_000381		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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