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GenBank Identifier | RefSeq Acc. | Name |
24371534 | NC_004348.1 | Salmonella typhimurium bacteriophage ST64T virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
17224 | + | 22080 | 90 | 21.5 | -23.2 | NP_720321 | 5' arm 3' arm | ||
17225 | + | 25850 | 90 | 20.5 | -21.3 | NP_720327 | 5' arm 3' arm | ||
17226 | + | 29371 | 90 | 19.5 | -22.1 | NP_720329 | 5' arm 3' arm | ||
17227 | + | 30112 | 89 | 20 | -20.3 | NP_720329 | 5' arm 3' arm | ||
17228 | + | 32127 | 87 | 21 | -20.59 | NP_720332 | 5' arm 3' arm | ||
17229 | + | 34481 | 83 | 19.5 | -24.3 | NP_720336 | 5' arm 3' arm | ||
17230 | + | 36086 | 90 | 19.5 | -22.3 | NP_720337 | 5' arm 3' arm | ||
17231 | + | 36375 | 87 | 21 | -22.9 | NP_720337 | 5' arm 3' arm | ||
17232 | - | 9037 | 85 | 22 | -23.4 | NP_720289 | 5' arm 3' arm | ||
17233 | - | 26874 | 88 | 19.5 | -20.8 | NP_720327 | 5' arm 3' arm | ||
17234 | - | 27065 | 87 | 20 | -20.2 | NP_720327 | 5' arm 3' arm | ||
17235 | - | 29731 | 90 | 25.5 | -22.6 | NP_720329 | 5' arm 3' arm | ||
17236 | - | 31114 | 90 | 20 | -20.4 | NP_720331 | 5' arm 3' arm | ||
17237 | - | 34745 | 88 | 19 | -23.8 | NP_720336 | 5' arm 3' arm | ||
17238 | - | 36097 | 89 | 21.5 | -19.8 | NP_720337 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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