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GenBank Identifier | RefSeq Acc. | Name |
20514400 | NC_003791.1 | Cycas necrotic stunt virus RNA 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15190 | + | 488 | 89 | 22.5 | -20.8 | NP_620619 | 5' arm 3' arm | ||
15191 | + | 1224 | 88 | 21 | -20.7 | NP_620619 | 5' arm 3' arm | ||
15192 | + | 2925 | 89 | 19.5 | -22.9 | NP_620619 | 5' arm 3' arm | ||
15193 | + | 3965 | 89 | 19 | -21.1 | NP_620619 | 5' arm 3' arm | ||
15194 | - | 741 | 77 | 19.5 | -26 | NP_620619 | 5' arm 3' arm | ||
15195 | - | 962 | 75 | 20.5 | -24.92 | NP_620619 | 5' arm 3' arm | ||
15196 | + | 867 | 88 | 23 | -20.42 | NP_620620 | 5' arm 3' arm | ||
15197 | + | 1126 | 90 | 23.5 | -23.22 | NP_620620 | 5' arm 3' arm | ||
15198 | + | 1794 | 89 | 20 | -22.5 | NP_620620 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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