miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
354	+	8392	90	21	-19.5	AP_000304		5' arm      3' arm
364	+	15017	88	19	-19.6	AP_000308		5' arm      3' arm
394	-	14880	90	19	-19.7	AP_000308		5' arm      3' arm
389	-	12535	86	21.5	-19.8	AP_000307		5' arm      3' arm
350	+	5987	87	21.5	-19.8	AP_000304		5' arm      3' arm
386	-	12156	90	21.5	-19.8	AP_000307		5' arm      3' arm
421	-	26742	86	19.5	-19.9	AP_000319		5' arm      3' arm
391	-	12964	89	21.5	-19.9	AP_000307		5' arm      3' arm
419	-	26077	89	24.5	-19.9	AP_000318		5' arm      3' arm
398	-	16830	89	22	-20.2	AP_000310		5' arm      3' arm
405	-	20526	90	19.5	-20.2	AP_000313		5' arm      3' arm
387	-	12286	86	19	-20.2	AP_000307		5' arm      3' arm
402	-	19930	89	21.5	-20.2	AP_000313		5' arm      3' arm
399	-	16943	88	19	-20.2	AP_000310		5' arm      3' arm
396	-	15464	90	20	-20.3	AP_000308		5' arm      3' arm
415	-	24252	89	20	-20.3	AP_000316		5' arm      3' arm
375	+	27823	88	21.5	-20.4	AP_000321		5' arm      3' arm
361	+	12205	87	19.5	-20.4	AP_000307		5' arm      3' arm
422	-	27190	80	19.5	-20.4	AP_000320		5' arm      3' arm
384	-	11108	90	19.5	-20.6	AP_000306		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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