miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
384	-	11108	90	19.5	-20.6	AP_000306		5' arm      3' arm
383	-	9112	89	20	-22.6	AP_000305		5' arm      3' arm
382	-	8849	90	19	-25.6	AP_000305		5' arm      3' arm
381	-	5861	80	19	-23.3	AP_000304		5' arm      3' arm
380	-	2097	90	24.5	-22.6	AP_000301		5' arm      3' arm
379	-	1049	89	20.5	-23.7	AP_000299		5' arm      3' arm
378	+	34597	89	26.5	-24.6	AP_000333		5' arm      3' arm
377	+	33785	86	19.5	-21.9	AP_000332		5' arm      3' arm
376	+	32326	83	19.5	-23	AP_000330		5' arm      3' arm
375	+	27823	88	21.5	-20.4	AP_000321		5' arm      3' arm
374	+	24400	87	20.5	-27.1	AP_000316		5' arm      3' arm
373	+	24155	90	20	-25.64	AP_000316		5' arm      3' arm
372	+	23664	81	20	-23	AP_000316		5' arm      3' arm
371	+	23310	81	19	-25.2	AP_000315		5' arm      3' arm
370	+	23209	88	22	-27.7	AP_000315		5' arm      3' arm
369	+	23059	90	27	-30.7	AP_000315		5' arm      3' arm
368	+	22594	87	20.5	-22.9	AP_000315		5' arm      3' arm
367	+	22377	90	22.5	-22.5	AP_000315		5' arm      3' arm
366	+	21117	81	19.5	-26.2	AP_000314		5' arm      3' arm
365	+	18461	85	19	-21	AP_000313		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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