miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18071213 NC_003324.1 Sinorhizobium meliloti phage PBC5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12402 + 54276 90 20.5 -27 NP_542336 5' arm      3' arm
12432 - 13441 89 20.5 -19.5 5' arm      3' arm
12496 - 56379 89 20.5 -23.8 NP_542342 5' arm      3' arm
12495 - 56204 89 20.5 -26.9 NP_542342 5' arm      3' arm
12485 - 50920 89 20.5 -21.1 NP_542329 5' arm      3' arm
12473 - 43000 86 21 -25.7 NP_542313 5' arm      3' arm
12335 + 16900 87 21 -24.5 5' arm      3' arm
12436 - 17662 90 21 -20.9 NP_542283 5' arm      3' arm
12462 - 38148 90 21 -25.8 NP_542306 5' arm      3' arm
12350 + 23822 90 21 -21.2 NP_542291 5' arm      3' arm
12356 + 26466 90 21 -24.71 NP_542293 5' arm      3' arm
12469 - 42250 86 21 -24.8 NP_542311 5' arm      3' arm
12372 + 33556 87 21 -19.9 NP_542298 5' arm      3' arm
12380 + 38108 90 21 -20.8 NP_542305 5' arm      3' arm
12382 + 38577 84 21 -20.6 NP_542306 5' arm      3' arm
12386 + 42754 90 21 -23.1 NP_542312 5' arm      3' arm
12388 + 44438 90 21 -22.5 NP_542316 5' arm      3' arm
12391 + 45151 86 21 -25.5 NP_542317 5' arm      3' arm
12392 + 45257 90 21 -23.4 NP_542317 5' arm      3' arm
12437 - 18149 90 21 -24.1 NP_542284 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.