miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12268	-	50295	90	20	-27.51	NP_536423		5' arm      3' arm
12267	-	48844	84	20	-23.8			5' arm      3' arm
12097	+	901	86	19.5	-21.3	NP_536358		5' arm      3' arm
12113	+	8385	87	23	-23.4	NP_536368		5' arm      3' arm
12114	+	8779	90	22	-29.3	NP_536369		5' arm      3' arm
12117	+	10924	90	24.5	-24	NP_536371		5' arm      3' arm
12118	+	11191	85	23	-29.6	NP_536371		5' arm      3' arm
12122	+	13862	89	20.5	-26.9	NP_536373		5' arm      3' arm
12116	+	10772	89	20	-28.1	NP_536371		5' arm      3' arm
12119	+	12688	90	19	-21.3	NP_536371		5' arm      3' arm
12125	+	16172	89	26	-22.9	NP_536375		5' arm      3' arm
12142	+	24639	87	20.5	-25.82	NP_536384		5' arm      3' arm
12146	+	26426	87	20.5	-19.9	NP_536387		5' arm      3' arm
12148	+	27951	90	21	-21.5	NP_536388		5' arm      3' arm
12149	+	28233	90	20.5	-22.2	NP_536389		5' arm      3' arm
12153	+	32895	90	22	-24.7	NP_536394		5' arm      3' arm
12156	+	34676	90	22	-19.7			5' arm      3' arm
12157	+	35306	90	22	-22.5	NP_536398		5' arm      3' arm
12155	+	34131	90	21.5	-20.9	NP_536395		5' arm      3' arm
12151	+	32474	88	21	-24.9	NP_536394		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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