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GenBank Identifier | RefSeq Acc. | Name |
38147300 | NC_005166.1 | Golden shiner reovirus segment 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23006 | - | 369 | 89 | 19.5 | -26.3 | NP_938060 | 5' arm 3' arm | ||
23007 | - | 2138 | 87 | 23.5 | -21.7 | NP_938060 | 5' arm 3' arm | ||
23008 | - | 2651 | 88 | 19 | -22.7 | NP_938060 | 5' arm 3' arm | ||
23009 | - | 2292 | 80 | 19 | -24.2 | NP_938061 | 5' arm 3' arm | ||
23010 | - | 266 | 87 | 22 | -19.5 | NP_938062 | 5' arm 3' arm | ||
23011 | - | 2250 | 87 | 23.5 | -26.9 | NP_938062 | 5' arm 3' arm | ||
23012 | - | 3136 | 89 | 20 | -23.8 | NP_938062 | 5' arm 3' arm | ||
23013 | - | 1957 | 90 | 20.5 | -20.5 | NP_938063 | 5' arm 3' arm | ||
23014 | - | 346 | 87 | 21.5 | -25.1 | NP_938064 | 5' arm 3' arm | ||
23015 | - | 230 | 78 | 19 | -20.8 | NP_938065 | 5' arm 3' arm | ||
23016 | - | 505 | 89 | 21 | -21.6 | 5' arm 3' arm | |||
23017 | - | 1270 | 87 | 21 | -22.5 | NP_938067 | 5' arm 3' arm | ||
23018 | + | 1183 | 86 | 19.5 | -23.4 | NP_938068 | 5' arm 3' arm | ||
23019 | - | 1214 | 89 | 19 | -21.8 | NP_938068 | 5' arm 3' arm | ||
23020 | + | 485 | 84 | 19.5 | -27.6 | NP_938071 | 5' arm 3' arm | ||
23021 | - | 687 | 90 | 22 | -22.3 | NP_938071 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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