miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18875445 NC_003412.1 Euprosterna elaeasa virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13469 + 726 89 22 -22 NP_573541 5' arm      3' arm
13470 + 1874 82 19 -36.2 NP_573541 5' arm      3' arm
13471 + 2516 90 20 -24.3 NP_573541 5' arm      3' arm
13472 + 3028 87 20 -27.8 NP_573541 5' arm      3' arm
13473 + 3873 88 24.5 -25.8 NP_573542 5' arm      3' arm
13474 + 4465 87 23.5 -27.6 NP_573542 5' arm      3' arm
13475 + 5454 89 21 -32.3 NP_573542 5' arm      3' arm
13476 - 280 90 19 -23.2 NP_573541 5' arm      3' arm
13477 - 1779 79 19 -21 NP_573541 5' arm      3' arm
13478 - 1957 88 20 -31.5 NP_573541 5' arm      3' arm
13479 - 3863 89 19 -25.5 NP_573542 5' arm      3' arm
13480 - 3960 90 20.5 -24.3 NP_573542 5' arm      3' arm
13481 - 4072 88 19 -23.7 NP_573542 5' arm      3' arm
13482 - 4551 87 20.5 -24.8 NP_573542 5' arm      3' arm
13483 - 4903 87 20 -22.2 NP_573542 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.