miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20026600 NC_003521.1 Chimpanzee cytomegalovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14367 - 47403 90 30 -32 5' arm      3' arm
13997 + 47314 90 28.5 -33.2 5' arm      3' arm
14534 - 164640 89 28.5 -28.8 NP_612737 5' arm      3' arm
13955 + 25309 90 28 -23.9 5' arm      3' arm
14249 + 207742 88 28 -29.2 5' arm      3' arm
14282 + 232479 89 27.5 -37.3 5' arm      3' arm
14316 - 17125 88 27.5 -25.9 NP_612657 5' arm      3' arm
14422 - 75782 88 27.5 -29.4 NP_612697 5' arm      3' arm
14233 + 193651 90 27.5 -29.4 NP_612766 5' arm      3' arm
14536 - 165800 89 27 -25.9 NP_612738 5' arm      3' arm
14399 - 65572 88 26.5 -26.4 NP_612691 5' arm      3' arm
14201 + 168825 87 26.5 -24.3 NP_612741 5' arm      3' arm
14586 - 207996 85 26.5 -19.8 5' arm      3' arm
14120 + 121178 89 26.5 -21 NP_612716 5' arm      3' arm
14448 - 90505 90 26 -25.3 5' arm      3' arm
14195 + 166754 88 26 -35.1 NP_612739 5' arm      3' arm
14468 - 117864 89 26 -24.3 NP_612714 5' arm      3' arm
14494 - 133306 87 26 -23.9 NP_612721 5' arm      3' arm
14547 - 177036 80 26 -30.8 5' arm      3' arm
14228 + 188028 90 26 -28.6 NP_612761 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.