miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
19718349 NC_003460.1 Propionibacterium phage phiB5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13612 + 1969 89 27 -24.7 NP_604426 5' arm      3' arm
13608 + 547 90 26.5 -31.8 NP_604422 5' arm      3' arm
13610 + 1584 90 25 -19.9 NP_604426 5' arm      3' arm
13615 + 2711 90 23.5 -20.1 NP_604426 5' arm      3' arm
13621 + 4456 90 23 -28.7 NP_604429 5' arm      3' arm
13616 + 2818 89 23 -20 NP_604426 5' arm      3' arm
13619 + 3742 86 22.5 -22.7 NP_604428 5' arm      3' arm
13613 + 2085 90 21.5 -20.5 NP_604426 5' arm      3' arm
13618 + 3538 90 21.5 -21.1 NP_604428 5' arm      3' arm
13620 + 4268 86 21 -21.9 NP_604429 5' arm      3' arm
13611 + 1758 90 21 -24.4 NP_604426 5' arm      3' arm
13609 + 1292 89 21 -20.4 NP_604425 5' arm      3' arm
13624 + 5223 89 20.5 -22.4 NP_604429 5' arm      3' arm
13623 + 5078 88 20.5 -30.3 NP_604429 5' arm      3' arm
13622 + 4750 90 20.5 -28.8 NP_604429 5' arm      3' arm
13617 + 3336 88 20.5 -21.8 NP_604428 5' arm      3' arm
13607 + 166 88 20.5 -27.4 NP_604421 5' arm      3' arm
13614 + 2200 90 20 -23.1 NP_604426 5' arm      3' arm
13625 + 5339 90 20 -23.9 NP_604429 5' arm      3' arm
13627 - 3698 81 20 -19.8 NP_604428 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.