miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4329	+	8237	88	21.5	-23.7			5' arm      3' arm
4387	-	40313	89	21.5	-19.9	NP_043904		5' arm      3' arm
4357	-	12313	89	21.5	-20.9	NP_043880		5' arm      3' arm
4322	+	2950	87	21	-20.7	NP_043872		5' arm      3' arm
4326	+	6401	89	21	-23.3	NP_043876		5' arm      3' arm
4367	-	23436	87	21	-22.5			5' arm      3' arm
4352	+	38539	79	21	-22.8			5' arm      3' arm
4336	+	14413	87	21	-21.5	NP_043881		5' arm      3' arm
4320	+	1567	89	21	-29.1			5' arm      3' arm
4361	-	18127	90	21	-24.8	NP_043885		5' arm      3' arm
4360	-	17990	89	21	-25.5	NP_043885		5' arm      3' arm
4341	+	20876	90	20.5	-25.8	NP_043886		5' arm      3' arm
4372	-	25941	90	20.5	-22.7	NP_043889		5' arm      3' arm
4324	+	4146	85	20.5	-22.4	NP_043873		5' arm      3' arm
4366	-	20965	90	20.5	-25.2	NP_043886		5' arm      3' arm
4340	+	20217	87	20.5	-20.6	NP_043886		5' arm      3' arm
4335	+	13277	90	20.5	-25.8	NP_043880		5' arm      3' arm
4347	+	24164	88	20.5	-21.6	NP_043889		5' arm      3' arm
4382	-	30839	90	20.5	-20.9	NP_043892		5' arm      3' arm
4333	+	11926	90	20.5	-20.3	NP_043879		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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