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| GenBank Identifier | RefSeq Acc. | Name |
| 9633173 | NC_000899.1 | Fowl adenovirus D |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 924 | - | 11692 | 80 | 20.5 | -30.6 | NP_050282 | 5' arm 3' arm | ||
| 936 | - | 28889 | 86 | 19.5 | -29.7 | NP_050291 | 5' arm 3' arm | ||
| 891 | + | 1563 | 88 | 23 | -29.2 | 5' arm 3' arm | |||
| 917 | + | 23846 | 90 | 21 | -29.2 | NP_050289 | 5' arm 3' arm | ||
| 908 | + | 11280 | 87 | 21 | -28.8 | NP_050282 | 5' arm 3' arm | ||
| 909 | + | 11609 | 87 | 19 | -26.9 | NP_050282 | 5' arm 3' arm | ||
| 890 | + | 1240 | 89 | 21.5 | -26.6 | NP_050279 | 5' arm 3' arm | ||
| 927 | - | 16708 | 88 | 23 | -26.5 | NP_050284 | 5' arm 3' arm | ||
| 893 | + | 2408 | 88 | 23.5 | -26.1 | NP_597818 | 5' arm 3' arm | ||
| 911 | + | 13633 | 90 | 20 | -26 | NP_050283 | 5' arm 3' arm | ||
| 946 | - | 38608 | 90 | 20.5 | -26 | NP_597828 | 5' arm 3' arm | ||
| 947 | - | 43584 | 90 | 23 | -25.8 | NP_597831 | 5' arm 3' arm | ||
| 902 | + | 8318 | 88 | 20 | -25.8 | NP_050281 | 5' arm 3' arm | ||
| 919 | + | 29573 | 89 | 19.5 | -25.8 | NP_050292 | 5' arm 3' arm | ||
| 918 | + | 28802 | 90 | 23 | -25.6 | NP_050291 | 5' arm 3' arm | ||
| 930 | - | 18212 | 89 | 19 | -25.4 | 5' arm 3' arm | |||
| 921 | + | 37881 | 90 | 22 | -24.5 | NP_597828 | 5' arm 3' arm | ||
| 900 | + | 7447 | 90 | 21 | -24.4 | NP_050281 | 5' arm 3' arm | ||
| 892 | + | 2211 | 90 | 20.5 | -24.4 | NP_597818 | 5' arm 3' arm | ||
| 915 | + | 17529 | 87 | 21 | -24.39 | NP_050284 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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