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GenBank Identifier | RefSeq Acc. | Name |
21699776 | NC_004064.1 | Calicivirus strain NB |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15657 | - | 6181 | 87 | 20.5 | -22.8 | NP_663315 | 5' arm 3' arm | ||
15656 | - | 5949 | 90 | 20 | -21.6 | NP_663315 | 5' arm 3' arm | ||
15655 | - | 5590 | 89 | 24 | -20.5 | NP_663315 | 5' arm 3' arm | ||
15654 | - | 5146 | 86 | 20 | -24.1 | NP_663315 | 5' arm 3' arm | ||
15653 | - | 3489 | 90 | 21 | -19.64 | NP_663315 | 5' arm 3' arm | ||
15652 | + | 7012 | 90 | 24 | -25.4 | NP_663316 | 5' arm 3' arm | ||
15651 | + | 6320 | 89 | 20 | -28.94 | NP_663315 | 5' arm 3' arm | ||
15650 | + | 5502 | 89 | 19 | -19.52 | NP_663315 | 5' arm 3' arm | ||
15649 | + | 5287 | 88 | 21 | -19.5 | NP_663315 | 5' arm 3' arm | ||
15648 | + | 5117 | 86 | 19 | -30.29 | NP_663315 | 5' arm 3' arm | ||
15647 | + | 885 | 86 | 19 | -20.4 | NP_663315 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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