miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20260798 NC_003693.1 Beet ringspot virus RNA 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15004 + 579 85 19.5 -19.96 NP_620112 5' arm      3' arm
15005 + 825 87 20.5 -28.2 NP_620112 5' arm      3' arm
15006 + 6960 89 19 -24.4 NP_620112 5' arm      3' arm
15007 - 1225 79 19.5 -21.2 NP_620112 5' arm      3' arm
15008 + 338 89 20 -24.5 NP_620113 5' arm      3' arm
15009 + 638 86 21.5 -25.5 NP_620113 5' arm      3' arm
15010 + 1124 85 20 -19.51 NP_620113 5' arm      3' arm
15011 + 2166 89 21.5 -22.3 NP_620113 5' arm      3' arm
15012 + 3213 90 21 -20.9 NP_620113 5' arm      3' arm
15013 + 3962 86 20.5 -26.4 NP_620113 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.