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GenBank Identifier | RefSeq Acc. | Name |
41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
26464 | + | 9378 | 90 | 21 | -19.4 | NP_958679 | 5' arm 3' arm | ||
26578 | - | 29010 | 86 | 21 | -19.4 | NP_958698 | 5' arm 3' arm | ||
26591 | - | 33678 | 87 | 21 | -19.5 | NP_958705 | 5' arm 3' arm | ||
26580 | - | 29578 | 90 | 22.5 | -19.5 | NP_958698 | 5' arm 3' arm | ||
26501 | + | 19919 | 85 | 19.5 | -19.6 | NP_958687 | 5' arm 3' arm | ||
26587 | - | 32294 | 88 | 19.5 | -19.6 | NP_958703 | 5' arm 3' arm | ||
26555 | - | 15320 | 86 | 19 | -19.8 | NP_958682 | 5' arm 3' arm | ||
26497 | + | 18940 | 89 | 20.5 | -19.8 | NP_958686 | 5' arm 3' arm | ||
26472 | + | 12160 | 90 | 21 | -19.8 | NP_958679 | 5' arm 3' arm | ||
26573 | - | 26490 | 86 | 19 | -19.9 | NP_958696 | 5' arm 3' arm | ||
26449 | + | 4033 | 83 | 23.5 | -20 | NP_958677 | 5' arm 3' arm | ||
26602 | - | 36029 | 90 | 19.5 | -20 | NP_958709 | 5' arm 3' arm | ||
26607 | - | 37298 | 88 | 23.5 | -20 | NP_958711 | 5' arm 3' arm | ||
26480 | + | 13988 | 82 | 21 | -20.02 | NP_958680 | 5' arm 3' arm | ||
26599 | - | 35707 | 88 | 19.5 | -20.1 | NP_958709 | 5' arm 3' arm | ||
26506 | + | 21397 | 90 | 19.5 | -20.1 | NP_958690 | 5' arm 3' arm | ||
26482 | + | 14923 | 89 | 22 | -20.2 | NP_958681 | 5' arm 3' arm | ||
26554 | - | 11144 | 90 | 22 | -20.2 | NP_958679 | 5' arm 3' arm | ||
26597 | - | 35173 | 89 | 23 | -20.2 | NP_958707 | 5' arm 3' arm | ||
26564 | - | 19002 | 89 | 19.5 | -20.3 | NP_958686 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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