miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26464 + 9378 90 21 -19.4 NP_958679 5' arm      3' arm
26578 - 29010 86 21 -19.4 NP_958698 5' arm      3' arm
26591 - 33678 87 21 -19.5 NP_958705 5' arm      3' arm
26580 - 29578 90 22.5 -19.5 NP_958698 5' arm      3' arm
26501 + 19919 85 19.5 -19.6 NP_958687 5' arm      3' arm
26587 - 32294 88 19.5 -19.6 NP_958703 5' arm      3' arm
26555 - 15320 86 19 -19.8 NP_958682 5' arm      3' arm
26497 + 18940 89 20.5 -19.8 NP_958686 5' arm      3' arm
26472 + 12160 90 21 -19.8 NP_958679 5' arm      3' arm
26573 - 26490 86 19 -19.9 NP_958696 5' arm      3' arm
26449 + 4033 83 23.5 -20 NP_958677 5' arm      3' arm
26602 - 36029 90 19.5 -20 NP_958709 5' arm      3' arm
26607 - 37298 88 23.5 -20 NP_958711 5' arm      3' arm
26480 + 13988 82 21 -20.02 NP_958680 5' arm      3' arm
26599 - 35707 88 19.5 -20.1 NP_958709 5' arm      3' arm
26506 + 21397 90 19.5 -20.1 NP_958690 5' arm      3' arm
26482 + 14923 89 22 -20.2 NP_958681 5' arm      3' arm
26554 - 11144 90 22 -20.2 NP_958679 5' arm      3' arm
26597 - 35173 89 23 -20.2 NP_958707 5' arm      3' arm
26564 - 19002 89 19.5 -20.3 NP_958686 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.