miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26589 - 32507 89 26.5 -25 NP_958704 5' arm      3' arm
26503 + 20254 89 26 -23.1 NP_958687 5' arm      3' arm
26455 + 5229 90 25.5 -25.3 NP_958678 5' arm      3' arm
26598 - 35535 90 25.5 -22.4 NP_958708 5' arm      3' arm
26483 + 15019 89 25 -29.3 NP_958681 5' arm      3' arm
26469 + 11123 86 25 -26.1 NP_958679 5' arm      3' arm
26481 + 14633 87 25 -25.7 NP_958681 5' arm      3' arm
26617 - 40167 90 24.5 -33.4 NP_958716 5' arm      3' arm
26453 + 4829 90 24.5 -22.1 NP_958678 5' arm      3' arm
26603 - 36248 88 24.5 -22.7 5' arm      3' arm
26447 + 2545 90 24 -22.6 NP_958675 5' arm      3' arm
26524 + 30643 89 24 -27.4 NP_958700 5' arm      3' arm
26454 + 5075 89 24 -21.8 NP_958678 5' arm      3' arm
26588 - 32395 89 24 -24 NP_958704 5' arm      3' arm
26572 - 25101 89 23.5 -24.5 NP_958694 5' arm      3' arm
26449 + 4033 83 23.5 -20 NP_958677 5' arm      3' arm
26499 + 19532 89 23.5 -27 NP_958686 5' arm      3' arm
26460 + 7132 88 23.5 -25.9 NP_958679 5' arm      3' arm
26607 - 37298 88 23.5 -20 NP_958711 5' arm      3' arm
26471 + 11890 90 23.5 -22.6 NP_958679 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.