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| GenBank Identifier | RefSeq Acc. | Name |
| 41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26560 | - | 17321 | 80 | 20 | -25.3 | NP_958683 | 5' arm 3' arm | ||
| 26513 | + | 23940 | 90 | 21.5 | -25.3 | NP_958693 | 5' arm 3' arm | ||
| 26455 | + | 5229 | 90 | 25.5 | -25.3 | NP_958678 | 5' arm 3' arm | ||
| 26566 | - | 21439 | 89 | 21.5 | -25.1 | NP_958690 | 5' arm 3' arm | ||
| 26525 | + | 31275 | 84 | 20 | -25.1 | NP_958701 | 5' arm 3' arm | ||
| 26589 | - | 32507 | 89 | 26.5 | -25 | NP_958704 | 5' arm 3' arm | ||
| 26594 | - | 34117 | 87 | 20 | -24.9 | NP_958706 | 5' arm 3' arm | ||
| 26619 | - | 40762 | 89 | 21 | -24.9 | NP_958716 | 5' arm 3' arm | ||
| 26443 | + | 1074 | 89 | 20.5 | -24.8 | NP_958672 | 5' arm 3' arm | ||
| 26519 | + | 27419 | 79 | 21 | -24.7 | NP_958698 | 5' arm 3' arm | ||
| 26546 | - | 6057 | 85 | 22 | -24.6 | NP_958678 | 5' arm 3' arm | ||
| 26461 | + | 7273 | 87 | 20.5 | -24.5 | NP_958679 | 5' arm 3' arm | ||
| 26476 | + | 13143 | 90 | 21 | -24.5 | NP_958680 | 5' arm 3' arm | ||
| 26572 | - | 25101 | 89 | 23.5 | -24.5 | NP_958694 | 5' arm 3' arm | ||
| 26451 | + | 4336 | 89 | 20 | -24.5 | NP_958677 | 5' arm 3' arm | ||
| 26609 | - | 37885 | 86 | 22 | -24.3 | NP_958711 | 5' arm 3' arm | ||
| 26466 | + | 9690 | 89 | 20.5 | -24.3 | NP_958679 | 5' arm 3' arm | ||
| 26448 | + | 2657 | 89 | 23 | -24.3 | NP_958675 | 5' arm 3' arm | ||
| 26585 | - | 31853 | 85 | 22 | -24.3 | 5' arm 3' arm | |||
| 26542 | - | 2177 | 90 | 21 | -24.3 | NP_958675 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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