miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26521 + 27940 86 21.5 -23.6 NP_958698 5' arm      3' arm
26522 + 30380 89 20.5 -22 NP_958699 5' arm      3' arm
26523 + 30548 89 20.5 -23.3 NP_958700 5' arm      3' arm
26524 + 30643 89 24 -27.4 NP_958700 5' arm      3' arm
26525 + 31275 84 20 -25.1 NP_958701 5' arm      3' arm
26526 + 31562 89 19.5 -22.3 NP_958702 5' arm      3' arm
26527 + 33062 87 21.5 -26.6 NP_958705 5' arm      3' arm
26528 + 33607 90 19.5 -25.4 NP_958705 5' arm      3' arm
26529 + 34169 87 19.5 -20.5 NP_958707 5' arm      3' arm
26530 + 34979 89 19.5 -23.5 NP_958707 5' arm      3' arm
26531 + 36514 88 22 -28.4 NP_958711 5' arm      3' arm
26532 + 37598 89 20.5 -25.4 NP_958711 5' arm      3' arm
26533 + 38736 90 19.5 -25.7 NP_958712 5' arm      3' arm
26534 + 39342 87 20 -26.8 NP_958715 5' arm      3' arm
26535 + 40078 90 23 -21.7 NP_958716 5' arm      3' arm
26536 + 40367 90 19.5 -23.2 NP_958716 5' arm      3' arm
26537 + 40716 90 19.5 -29.5 NP_958716 5' arm      3' arm
26538 - 419 88 21.5 -21.7 NP_958671 5' arm      3' arm
26539 - 1050 90 20 -25.3 NP_958672 5' arm      3' arm
26540 - 1495 90 20 -28.1 NP_958673 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.