miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
32170834 NC_004913.1 Stx1 converting bacteriophage virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
21926 + 41751 87 21.5 -25.9 NP_859197 5' arm      3' arm
21925 + 41042 89 25.5 -27.4 NP_859195 5' arm      3' arm
21924 + 31350 90 24 -23.8 5' arm      3' arm
21923 + 28648 86 24 -29.8 NP_859151 5' arm      3' arm
21920 + 26185 86 20.5 -31.6 NP_859129 5' arm      3' arm
21921 + 26383 90 23.5 -28.2 NP_859146 5' arm      3' arm
21922 + 26602 89 28.5 -19.6 NP_859129 5' arm      3' arm
21917 + 21101 82 19 -20.8 NP_859134 5' arm      3' arm
21918 + 21271 88 19.5 -21.3 NP_859129 5' arm      3' arm
21904 + 3425 89 23 -29.7 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.