miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
50080143 NC_004452.3 Beet black scorch virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17432 + 1432 90 19 -21.4 NP_758810 5' arm      3' arm
17433 + 1880 88 26 -26.6 NP_758810 5' arm      3' arm
17434 + 2118 89 19.5 -34.7 NP_758812 5' arm      3' arm
17435 + 2412 87 19.5 -24.3 NP_758814 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.